PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna09147.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family WRKY
Protein Properties Length: 335aa    MW: 36108.9 Da    PI: 9.9976
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna09147.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.83.9e-32261319259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               D+y+WrKYGqK++kgs++pr+YY+C+s+ gCp++k+ver+ +dp+++++tYeg+Hnh+
  mrna09147.1-v1.0-hybrid 261 ADEYSWRKYGQKPIKGSPHPRGYYKCSSQrGCPARKHVERAVDDPSMLIVTYEGDHNHS 319
                              69*************************999****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.3E-15212258IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.3E-34247320IPR003657WRKY domain
PROSITE profilePS5081130.733255321IPR003657WRKY domain
SuperFamilySSF1182907.85E-27257319IPR003657WRKY domain
SMARTSM007741.8E-38260320IPR003657WRKY domain
PfamPF031068.3E-28262318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
PO:0007134developmental stagesporophyte vegetative stage
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAVELMMGLV DSFAAKMEEN DVKEAASAGI QSVEKFISLM SSSSASESAS LEYKAVADMA  60
VDKFRKVISL LDRGRTGHAR FRRGPVNTTT TATVSSSLPQ QAPQVLTRET GQPSFRCQDA  120
TNLKTEQSQS SSAFKVYCPK PVLRLPPLPK SGTSFSFTAS PAVSGSNSFM SGDGETTTTL  180
QHSMSSGFQL TNMSNMSVSS AGKPPLPSSS FKRKCNSVDD STAMRCGSSS SRCHCSKKRK  240
SRVKRVTRIP AISTKMADIP ADEYSWRKYG QKPIKGSPHP RGYYKCSSQR GCPARKHVER  300
AVDDPSMLIV TYEGDHNHSQ AVTEAMAAIV LESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22247318171WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291076.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-107WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLW9SE621e-131W9SE62_9R
STRINGVIT_18s0001g10030.t011e-126(Vitis vinifera)
STRINGSolyc04g078550.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.17e-80WRKY DNA-binding protein 7